miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159628236|gb|EG383514.1|EG383514 CCATTGCCACATCACAGAAAAACAATTAGCACACGGCGCATCTCATCGACACGCAAAAACACGGTCAGTCGACACACGGC
ACAGCACGACCGATGTGAAGCGTCACCAATCGGAACCGGATCCTCTGCAGTACTGCCCTCTGACTTTGGGCAGCTGACAT
GTGGGCCACCATGCTAGCGGGCCCACATGTCAGCCACAGAGTCCCTCTGCAGTATTGCAGGGAAGGCTCGTCGCACCAAT
CAGCATATGAAGGCAACATCAGCATGCTCGTCACTGCAGTAGAGGCCAGGCTGCTGGACGTACCCCTGCTTGGACAGCAG
CCCGCGCGCCCTTCGCACGAGTTCCCTGTTGGTCACCTTCCCGCGCTTCTCCTCCGCGAGGACCGCCTGGATGGCGTTGC
TGAGCGCGCCGTAGGACACGCCGCTGGCCGTGGTCAAGTCGGCCGAGGACTCGTCGGTCTGGCACCCGCTGATCAGGACG
CCGTTGCGTGGCGGCGACACCTTCGCCGCGGCACCTGCGTACACCTCCTCGACGCTCCGCACCTCCTGCTCCATGGCTGG
TCCGAGCGCGTCCGCCAGATCCCCGCCTCGGCCGCCGTCCGGCTTNNCCTTCGGGATCATCTCTGTGACCGTGGCGGCCT
GATCAGGGCCATGCGGGAGCTTGCCGCCCACCATGGCATTGACGAACTTCTTGATCTTGGGCGTGGCG




Most similar to sp|O64517|MCA4_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O64517|MCA4_ARATH Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4
           PE=1 SV=1
          Length = 418

 Score =  114 bits (285), Expect = 6e-25
 Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
 Frame = -2

Query: 707 ATPKIKKFVNAMVGGKLPHGPDQAATVTEMIXXXXXXXXXXXXXXXXXXXA-MEQEVRSV 531
           ++PK+KKF+  ++G KL  G  +   +  M+                     M+  V S 
Sbjct: 262 SSPKVKKFMKVILG-KLQAGNGEEGGLMGMLGKLASGFLEGKLNDEDYVKPAMQTHVGSK 320

Query: 530 EEVYAGAAAKVSP-PRNGVLISGCQTDESSADLTTASGVS--YGALSNAIQAVLAEEKRG 360
           EEVYAG +    P P +G+LISGCQTD++SAD T A   +  YGA+SN+IQ +L EE  G
Sbjct: 321 EEVYAGGSRGSVPLPDSGILISGCQTDQTSADATPAGKPTEAYGAMSNSIQTIL-EETDG 379

Query: 359 KVTNRELVRRARGLLSKQGYVQQPGLYCSDEHADVAFIC 243
           +++NRE+V RAR  L KQG+ QQPGLYC D +A+  FIC
Sbjct: 380 EISNREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418